Fragment Size Analysis

The Fragment Analysis service offers the AMPFLSTR IdentifilerPlus Assay for cell line identification.This assay does identify Human Genomic DNA for 15 tetranucleotide repeat loci and the amelogenin gender determination marker.Our 3730XL Genetic Analyzer uses five fluorescent dyes per lane permitting multiplexing of four microsatellites and a fifth dyefor an internal size standard to correct for variability betweenlanes.

 

Fragment Size Analysis

Platform
Fragment Analysis
Category
Genotyping with Identifiler Plus Kit
Primary Contact

Suzanne Genik
genik@umich.edu
734-764-8067

Typical Cost Click here to view internal pricing list!
Click here to view external pricing list!
Typical Output

Raw data .fsa files are generated for each sample. GeneMappersoftware is used to analyze the data and .pdf documents aregenerated  of the analyzed data. HID GeneMarker softwarefrom SoftGenetics is available for clients to check out andanalyze data themselves.

How to Request

Sample Submission: go to http://seqcore.brcf.med.umich.edu/SampleSubmission.cgi then choose ‘Submit Fragment Analysis Samples or CE plates‘.

Sample Requirements

Submit 20ul of DNA sample at a concentration of 0.1 ng/ul in Ultra pure RNase, DNase free water or EB Buffer.

Typical Turnaround

Between 1 to 3 days. The Identifiler Plus samples take a couple of days to process.

Critical Information

Submit samples in 1.5 ml microcentrifudge tubes. It is important to Label each tubes with the identification number assigned by our database on submission of your samples.

More Information

The HID GeneMarker software is available to check out at room 2568 MSRB II.

Clients must have an account set up with the DNA Sequencing Core prior to submission of samples.

The clients can use any of our drop off locations listed on our web page: http://seqcore.brcf.med.umich.edu/.

Identifiler Plus samples received from outside the University of Michigan can be shipped to: University of Michigan, DNA Sequencing Core, NCRC Bld 14, Room 122, 2800 Plymouth Road, Ann Arbor, MI 48109-2800.